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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 13

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 33 22

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 14

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ComputationalReviewTemplate ComputationalReviewTemplate Public template

    A repository to start computational reviews with AI

    JavaScript 13 3

Repositories

Showing 10 of 731 repositories
  • SLAP2-Voltage-Extraction Public Forked from AMShelton/SLAP2-Voltage-Extraction

    Repository for extracting voltage data from SLAP2 acquisitions

    AllenNeuralDynamics/SLAP2-Voltage-Extraction's past year of commit activity
    MATLAB 0 1 0 0 Updated Nov 10, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging's past year of commit activity
    C# 0 MIT 1 15 4 Updated Nov 10, 2026
  • AllenNeuralDynamics/aind-pophys-metadata's past year of commit activity
    Python 0 MIT 0 0 5 Updated Nov 10, 2026
  • AllenNeuralDynamics/openscope_p3_data_release_paper's past year of commit activity
    HTML 5 11 5 2 Updated Nov 10, 2026
  • exaspim-swc-processing Public

    Processing and packaging of exaSPIM neuron SWC reconstructions into per-cell AIND derived data assets.

    AllenNeuralDynamics/exaspim-swc-processing's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 10, 2026
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    AllenNeuralDynamics/aind-analysis-job-dispatch's past year of commit activity
    Python 0 MIT 0 3 0 Updated Nov 10, 2026
  • s3-browser Public

    Browse public S3 buckets like folders, in the browser

    AllenNeuralDynamics/s3-browser's past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 10, 2026
  • AllenNeuralDynamics/prototome-web-ui's past year of commit activity
    TypeScript 0 0 3 1 Updated Nov 10, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 24 1 Updated Nov 10, 2026
  • harp.device.white-rabbit Public

    0361: A 16-output Harp clock synchronizer

    AllenNeuralDynamics/harp.device.white-rabbit's past year of commit activity
    C# 1 0 2 0 Updated Nov 10, 2026