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Lukecele/README.md

Luca Celebrano

Medical Student & Bioinformatics Researcher · Università degli Studi di Napoli Federico II & TIGEM
Computational oncology, spatial multi-omics, reaction-diffusion biophysics & reproducible software.
Founder of Web3 protocol @arbincept.

🌐 The Cave (Research Portfolio) · 📝 Substack · 💼 LinkedIn · 🆔 ORCID · 🤗 Hugging Face


🎬 3D Simulation (From YouTube Shorts & Instagram Reel)

🔴 Watch on YouTube Shorts ⭐ Drop a Star on the Repository ⚡ Try Live Mobile 60 FPS Simulator 🔬 Read Scientific Deep Dive

💡 Visiting from Mobile / In-App Browser? Tap ⋮ (top right) ➔ Open in Chrome / Safari to star the repository with 1-tap using your logged-in GitHub account!

If you arrived here from the 3D Reaction-Diffusion Tumor Cord Simulation:


🧠 Plain-Language Digest (Gist.Science)

Author-reviewed clinical & biophysical lay summary (Conditions for Pharmacological Sanctuaries in Perivascular Tumour Cords, rs-11530312) by Dr. Luc Hendriks, PhD & Luca Celebrano:

🇬🇧 Read English Plain-Language Digest ↗

Also translated into 11 languages:
🇮🇳 हिन्दी (Hindi) · 🇮🇹 Italiano · 🇪🇸 Español · 🇫🇷 Français · 🇩🇪 Deutsch · 🇵🇹 Português · 🇨🇳 中文 · 🇯🇵 日本語 · 🇰🇷 한국어 · 🇸🇦 العربية · 🇳🇱 Nederlands


🔬 Research & Computational Systems

An in silico biophysical reaction-diffusion theory of pharmacological sanctuaries, post-ADAURA recurrence kinetics, and the prospective SG-ADAURA trial protocol hypothesis.

Evidence-linked translational models, exploratory GIST phenotype scoring, candidate registry, and Composite Resistance Index (CRI) audit tools.

3. 🎲 InSituGame

Spatial evolutionary game-theoretic assay for inferring subclonal payoff matrices and adaptive therapy dynamics.

Subcellular transport boundaries in EGFR-mutant NSCLC via 10x Visium HD (officially curated in awesome-single-cell).

5. 👁️ InSituVision-AI

Low-cost Attention-MIL pathology AI for spatial vascular decoupling on routine H&E whole-slide images.

Cylindrical Bessel K₀ reaction-diffusion solver and MSKCC survival validation (N = 604).


📦 Software Packages & Stack

conda install -c bioconda spatial-continuum insitugame spatial-sanctuary
pip install spatial-continuum
  • Package Registries: PyPI · Bioconda
  • Stack: Python (NumPy, SciPy, pandas, scikit-learn, PyTorch) · Nextflow DSL2 (nf-core) · Snakemake · Galaxy (IUC) · Bioconda · Docker/Singularity · TypeScript · Three.js

🩺 Clinical Education

Interactive 3D cardiology & pulmonology learning platform built with React, TypeScript, Three.js, and Tailwind CSS (3D cardiac anatomy, ECG telemetry simulator, auscultation audio library).
👉 Launch MedTerminal ↗

💼 Engineering Roots: Web3 & DeFi (Click to expand)

Before entering medical research, I built open-source blockchain and protocol software through the Arbitrage Inception organization:

This deterministic systems background directly informs my approach to scientific software reliability.


🤝 Verified Upstream Contributions

Selected merged pull requests in upstream repositories:


📬 Contact & Academic Affiliations

  • 🏛️ Medical School: Department of Clinical Medicine and Surgery, Università degli Studi di Napoli Federico II.
  • 🧬 Bioinformatics Thesis: TIGEM (Telethon Institute of Genetics and Medicine).
  • 🎓 Academic Email: [email protected]
  • ✉️ Personal Email: [email protected]

Pinned Loading

  1. spatial-continuum-translational spatial-continuum-translational Public

    Evidence-linked translational extensions for spatial-continuum-oncology

    Python 1

  2. spatial-continuum-oncology spatial-continuum-oncology Public

    🔬 Why do 68% of lung cancers relapse post-ADAURA? Biophysical reaction-diffusion solver, 60 FPS simulator & 1-click Colab.

    Jupyter Notebook 2

  3. spatial-game-assay spatial-game-assay Public

    🎮 In situ evolutionary game theory for spatial omics: inferring subclonal payoff matrices & Nash attractors in cancer.

    Python 2