The codebase of the OpenMS project
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
Identify and quantify MHC eluted peptides from mass spectrometry raw data
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Proteomics label-free quantification (LFQ) analysis pipeline
SDRF official validator and converts SDRF to pipeline configuration files
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
Python module for lipidomics LC MS/MS data analysis
🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data
面向开源扫雷网，兼容元扫雷和阿比特的扫雷录像分析工具
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
Open-source, self-hostable bioinformatics and computational research platform integrating DNA/RNA analysis, exploratory molecular docking, African phytochemistry, LC-MS/MS workflows, and traceable scientific evidence.
A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.
Interactive proteoform-centric visualization for top-down proteomics — OpenMS GSoC 2026 prototype
Select specified scans and precursors from a mzML file
ProSE desktop: search mass spectrometry data with the ProSE engine of OpenMS (Tauri app)
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